The Burke Lab
Publications
-2008-
Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. 2008. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol., in press. [pdf]
Burger, J.C., M.A. Chapman, and J.M. Burke. 2008. Molecular insights into the evolution of crop plants. Am. J. Bot. 95:113-122. [pdf]
Baack, E.J., Y. Sapir, M.A. Chapman, J.M. Burke, and L.H. Rieseberg. 2008. Selection on domestication traits and quantitative trait loci in crop-wild sunflower hybrids. Mol. Ecol. 17: 666-677. [pdf]
-2007-
Burke, J.M., J.C. Burger, and M.A. Chapman. 2007. Crop evolution: from genetics to genomics. Curr. Opin. Genet. Dev. 17: 525-532. [pdf]
Chapman, M.A. and J.M. Burke. 2007. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol., 7: 60. doi:10.1186/1471-2229-7-60 [pdf]
Kolkman, J.M., S.T. Berry, A.J. Leon, M.B. Slabaugh, S. Tang, W. Gao, D.K. Shintani, J.M. Burke, and S.J. Knapp. 2007. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics, 177: 457-468. [pdf]
Wills, D.M. and J.M. Burke. 2007. QTL analysis of the early domestication of sunflower. Genetics, 176: 2589-2599. [pdf]
Chapman, M.A., J.-C. Chang, D. Weisman, R.V. Kesseli, and J.M. Burke. 2007. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). Theor. Appl. Genet., 115: 747-755. [pdf] [supp]
Chapman, M.A. and J.M. Burke. 2007. Genetic divergence and hybrid speciation. Evolution, 61: 1773-1780. [pdf]
Ellis, J.R. and J.M. Burke. 2007. EST-SSRs as a resource for population genetic analyses. Heredity, 99: 125-132. [pdf]
-2006-
Liu, A. and J.M. Burke. 2006. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics 173: 321-330. [pdf]
Ellis, J.R., C.H. Pashley, J.M. Burke, and D.E. McCauley. 2006. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol. Ecol. 15: 2345-2355. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Radishes gone wild. Heredity 97: 379-380. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Letting the gene out of the bottle: the population genetics of GM crops. New Phytol. (Tansley Review) 170: 429-443. [pdf]
Pashley, C.H., J.R. Ellis, D.E. McCauley, and J.M. Burke. 2006. EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 97: 381-388. [pdf] [primer info]
Wills, D.M. and J.M. Burke. 2006. Chloroplast DNA variation confirms a single origin of domesticated sunflower (Helianthus annuus L.). J. Hered. 97: 403-408. [pdf]
Arnold, M.L. and J.M. Burke. 2006. Natural hybridization. In C.W. Fox and J.B. Wolf, eds. Pp. 399-413 in Evolutionary Genetics: Concepts and Case Studies. Oxford University Press.
-2005-
Burke, J.M., S.J. Knapp, and L.H. Rieseberg. 2005. Genetic consequences of selection during the evolution of cultivated sunflower. Genetics 171: 1933-1940. [pdf]
Lai, Z., T. Nakazato, M. Salmaso, J.M. Burke, S. Tang, S.J. Knapp, and L.H. Rieseberg. 2005. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171: 291-303. [pdf] [supplement]
Wills, D.M., M.L. Hester, A. Liu and J.M. Burke. 2005. Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus. Theoretical and Applied Genetics 110: 941-947. [pdf]
Wood, T.E., J.M. Burke and L.H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123: 157-170. [pdf]
-2004-
Cornman, R.S., J.M. Burke, R.A. Wesselingh and M.L. Arnold. 2004. Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population. Evolution 58: 2669-2681. [pdf]
Burke, J.M. 2004. When good plants go bad... Evolution 58:1637-1638. [pdf]
Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp and L.H. Rieseberg. 2004. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 167: 449-457. [pdf] [supp]
-2003-
Burke, J.M. and L. H. Rieseberg. 2003. Fitness effects of transgenic disease resistance in sunflowers. Science 300: 1250. [pdf]
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2003. The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Phil. Trans. R. Soc. London B 358: 1141-1147. [pdf]
-2002-
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2002. Directional selection is the primary cause of phenotypic diversification. Proc. Natl. Acad. Sci. USA 99: 12242-12245. [pdf] [supp]
Burke, J.M., K.A. Gardner and L.H. Rieseberg. 2002. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. Am. J. Bot. 89: 1550-1552. [pdf]
Burke, J.M., S. Tang, S.J. Knapp and L.H. Rieseberg. 2002 Genetic analysis of sunflower domestication. Genetics 161: 1257-1267. [pdf]
Burke, J.M. and J.L. Hamrick. 2002. Genetic variation and evidence of hybridization in the genus Rhus (Anacardiaceae). J. Hered. 93: 37-41. [pdf]
-2001-
Rieseberg, L.H. and J.M. Burke. 2001. A genic view of species integration. J. Evol. Biol. 14: 883-886. [pdf]
Burke, J.M. and M.L. Arnold. 2001. Genetics and the fitness of hybrids. Annu. Rev. Genet. 35: 31-52. [pdf]
Rieseberg, L.H. and J.M. Burke. 2001. The biological reality of species: gene flow, selection, and collective evolution. Taxon 50: 47-67. [pdf]
-2000-
Burke, J.M. and L.H. Rieseberg. 2000. Hybrids and hybridization. R. Robinson, ed. Plant Sciences for Students, Macmillan Reference USA, New York. [pdf]
Burke, J.M., C.W. DePamphilis, R. Wyatt, and M.L. Arnold. 2000. Nectar characteristics of interspecific hybrids and their parents in Aesculus (Hippocastanaceae) and Iris (Iridaceae). J. Torrey Bot. Soc. 127: 200-206. [pdf]
Burke, J.M., M.R. Bulger, R.A. Wesselingh, and M.L. Arnold. 2000. Frequency and spatial patterning of clonal reproduction in Louisiana iris hybrid populations. Evolution 54:137-144. [pdf]
-1999-
Allen, E.S., J.M. Burke, M.E. Welch, and L.H. Rieseberg. 1999. Reliability of science on the web. Nature 402: 722. [pdf]
Burke, J.M. and M.L. Arnold. 1999. Isolation and characterization of microsatellites in Iris. Mol. Ecol. 8: 1091-1092. [pdf]
Arnold, M.L., M.R. Bulger, J.M. Burke, A.L. Hempel, and J.H. Williams. 1999. Natural hybridization: how low can you go (and still be important)? Ecology 80: 371-381. [pdf]
-1998-
Burke, J.M., T.J. Voss, and M.L. Arnold. 1998. Genetic interactions and natural selection in Louisiana iris hybrids. Evolution 52: 1304-1310. [pdf]
Burke, J.M., S.E. Carney, and M.L. Arnold. 1998. Hybrid fitness in the Louisiana irises: analysis of parental and F1 performance. Evolution 52: 37-43. [pdf]
-1996-
Hodges, S.A., J.M. Burke, and M.L. Arnold. 1996. Natural formation of Iris hybrids: experimental evidence on the establishment of hybrid zones. Evolution 50: 2504- 2509. [pdf]
Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. 2008. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol., in press. [pdf]
Burger, J.C., M.A. Chapman, and J.M. Burke. 2008. Molecular insights into the evolution of crop plants. Am. J. Bot. 95:113-122. [pdf]
Baack, E.J., Y. Sapir, M.A. Chapman, J.M. Burke, and L.H. Rieseberg. 2008. Selection on domestication traits and quantitative trait loci in crop-wild sunflower hybrids. Mol. Ecol. 17: 666-677. [pdf]
-2007-
Burke, J.M., J.C. Burger, and M.A. Chapman. 2007. Crop evolution: from genetics to genomics. Curr. Opin. Genet. Dev. 17: 525-532. [pdf]
Chapman, M.A. and J.M. Burke. 2007. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol., 7: 60. doi:10.1186/1471-2229-7-60 [pdf]
Kolkman, J.M., S.T. Berry, A.J. Leon, M.B. Slabaugh, S. Tang, W. Gao, D.K. Shintani, J.M. Burke, and S.J. Knapp. 2007. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics, 177: 457-468. [pdf]
Wills, D.M. and J.M. Burke. 2007. QTL analysis of the early domestication of sunflower. Genetics, 176: 2589-2599. [pdf]
Chapman, M.A., J.-C. Chang, D. Weisman, R.V. Kesseli, and J.M. Burke. 2007. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). Theor. Appl. Genet., 115: 747-755. [pdf] [supp]
Chapman, M.A. and J.M. Burke. 2007. Genetic divergence and hybrid speciation. Evolution, 61: 1773-1780. [pdf]
Ellis, J.R. and J.M. Burke. 2007. EST-SSRs as a resource for population genetic analyses. Heredity, 99: 125-132. [pdf]
-2006-
Liu, A. and J.M. Burke. 2006. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics 173: 321-330. [pdf]
Ellis, J.R., C.H. Pashley, J.M. Burke, and D.E. McCauley. 2006. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol. Ecol. 15: 2345-2355. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Radishes gone wild. Heredity 97: 379-380. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Letting the gene out of the bottle: the population genetics of GM crops. New Phytol. (Tansley Review) 170: 429-443. [pdf]
Pashley, C.H., J.R. Ellis, D.E. McCauley, and J.M. Burke. 2006. EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 97: 381-388. [pdf] [primer info]
Wills, D.M. and J.M. Burke. 2006. Chloroplast DNA variation confirms a single origin of domesticated sunflower (Helianthus annuus L.). J. Hered. 97: 403-408. [pdf]
Arnold, M.L. and J.M. Burke. 2006. Natural hybridization. In C.W. Fox and J.B. Wolf, eds. Pp. 399-413 in Evolutionary Genetics: Concepts and Case Studies. Oxford University Press.
-2005-
Burke, J.M., S.J. Knapp, and L.H. Rieseberg. 2005. Genetic consequences of selection during the evolution of cultivated sunflower. Genetics 171: 1933-1940. [pdf]
Lai, Z., T. Nakazato, M. Salmaso, J.M. Burke, S. Tang, S.J. Knapp, and L.H. Rieseberg. 2005. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171: 291-303. [pdf] [supplement]
Wills, D.M., M.L. Hester, A. Liu and J.M. Burke. 2005. Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus. Theoretical and Applied Genetics 110: 941-947. [pdf]
Wood, T.E., J.M. Burke and L.H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123: 157-170. [pdf]
-2004-
Cornman, R.S., J.M. Burke, R.A. Wesselingh and M.L. Arnold. 2004. Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population. Evolution 58: 2669-2681. [pdf]
Burke, J.M. 2004. When good plants go bad... Evolution 58:1637-1638. [pdf]
Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp and L.H. Rieseberg. 2004. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 167: 449-457. [pdf] [supp]
-2003-
Burke, J.M. and L. H. Rieseberg. 2003. Fitness effects of transgenic disease resistance in sunflowers. Science 300: 1250. [pdf]
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2003. The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Phil. Trans. R. Soc. London B 358: 1141-1147. [pdf]
-2002-
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2002. Directional selection is the primary cause of phenotypic diversification. Proc. Natl. Acad. Sci. USA 99: 12242-12245. [pdf] [supp]
Burke, J.M., K.A. Gardner and L.H. Rieseberg. 2002. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. Am. J. Bot. 89: 1550-1552. [pdf]
Burke, J.M., S. Tang, S.J. Knapp and L.H. Rieseberg. 2002 Genetic analysis of sunflower domestication. Genetics 161: 1257-1267. [pdf]
Burke, J.M. and J.L. Hamrick. 2002. Genetic variation and evidence of hybridization in the genus Rhus (Anacardiaceae). J. Hered. 93: 37-41. [pdf]
-2001-
Rieseberg, L.H. and J.M. Burke. 2001. A genic view of species integration. J. Evol. Biol. 14: 883-886. [pdf]
Burke, J.M. and M.L. Arnold. 2001. Genetics and the fitness of hybrids. Annu. Rev. Genet. 35: 31-52. [pdf]
Rieseberg, L.H. and J.M. Burke. 2001. The biological reality of species: gene flow, selection, and collective evolution. Taxon 50: 47-67. [pdf]
-2000-
Burke, J.M. and L.H. Rieseberg. 2000. Hybrids and hybridization. R. Robinson, ed. Plant Sciences for Students, Macmillan Reference USA, New York. [pdf]
Burke, J.M., C.W. DePamphilis, R. Wyatt, and M.L. Arnold. 2000. Nectar characteristics of interspecific hybrids and their parents in Aesculus (Hippocastanaceae) and Iris (Iridaceae). J. Torrey Bot. Soc. 127: 200-206. [pdf]
Burke, J.M., M.R. Bulger, R.A. Wesselingh, and M.L. Arnold. 2000. Frequency and spatial patterning of clonal reproduction in Louisiana iris hybrid populations. Evolution 54:137-144. [pdf]
-1999-
Allen, E.S., J.M. Burke, M.E. Welch, and L.H. Rieseberg. 1999. Reliability of science on the web. Nature 402: 722. [pdf]
Burke, J.M. and M.L. Arnold. 1999. Isolation and characterization of microsatellites in Iris. Mol. Ecol. 8: 1091-1092. [pdf]
Arnold, M.L., M.R. Bulger, J.M. Burke, A.L. Hempel, and J.H. Williams. 1999. Natural hybridization: how low can you go (and still be important)? Ecology 80: 371-381. [pdf]
-1998-
Burke, J.M., T.J. Voss, and M.L. Arnold. 1998. Genetic interactions and natural selection in Louisiana iris hybrids. Evolution 52: 1304-1310. [pdf]
Burke, J.M., S.E. Carney, and M.L. Arnold. 1998. Hybrid fitness in the Louisiana irises: analysis of parental and F1 performance. Evolution 52: 37-43. [pdf]
-1996-
Hodges, S.A., J.M. Burke, and M.L. Arnold. 1996. Natural formation of Iris hybrids: experimental evidence on the establishment of hybrid zones. Evolution 50: 2504- 2509. [pdf]