The Burke Lab
Publications
-2009-
Chapman, M.A, J. Hvala, J. Strever, M. Matvienko, A. Kozik, R.W. Michelmore, S. Tang, S.J. Knapp, and J.M. Burke. 2009. Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor. Appl. Genet., in press.
Heesacker, A., R.L. Brunick, L.H. Rieseberg, J.M. Burke, S.J. Knapp. 2009. Karyotypic evolution of the common and silverleaf sunflower genomes. Plant Genome, in press.
Sherman, N.A. and J.M. Burke. 2009. Population genetic analysis reveals a homoploid hybrid origin of Stephanomeria diegensis (Asteraceae). Mol. Ecol., in press. [pdf]
Baskauf, C.J. and J.M. Burke. 2009. Population genetics of Astragalus bibullatus (Fabaceae) using AFLPs. J. Hered. 100: 424-431. [pdf]
Dechaine, J.M., J.C. Burger, M.A. Chapman, G.J. Seiler, R. Brunick, S.J. Knapp, and J.M. Burke. 2009. Fitness effects and genetic architecture of plant-herbivore interactions in sunflower crop-wild hybrids. New Phytol., doi: 10.1111/j.1469-8137.2009.02964.x. [pdf]
-2008-
Chapman, M.A., C.H. Pashley, J. Wenzler, J. Hvala, S. Tang, S.J. Knapp, and J.M. Burke. 2008. A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus L.). Plant Cell 20: 2931-2945. [pdf] [supp]
Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. 2008. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol., 25: 1260-1273. [pdf]
Rieseberg, L.H. and J.M. Burke. 2008. Molecular evidence and the origin of cultivated sunflower. Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.0804494105. [pdf]
Burger, J.C., M.A. Chapman, and J.M. Burke. 2008. Molecular insights into the evolution of crop plants. Am. J. Bot. 95:113-122. [pdf]
Baack, E.J., Y. Sapir, M.A. Chapman, J.M. Burke, and L.H. Rieseberg. 2008. Selection on domestication traits and quantitative trait loci in crop-wild sunflower hybrids. Mol. Ecol. 17: 666-677. [pdf]
-2007-
Burke, J.M., J.C. Burger, and M.A. Chapman. 2007. Crop evolution: from genetics to genomics. Curr. Opin. Genet. Dev. 17: 525-532. [pdf]
Chapman, M.A. and J.M. Burke. 2007. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol. 7: 60. doi:10.1186/1471-2229-7-60. [pdf]
Kolkman, J.M., S.T. Berry, A.J. Leon, M.B. Slabaugh, S. Tang, W. Gao, D.K. Shintani, J.M. Burke, and S.J. Knapp. 2007. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics 177: 457-468. [pdf]
Wills, D.M. and J.M. Burke. 2007. QTL analysis of the early domestication of sunflower. Genetics 176: 2589-2599. [pdf]
Chapman, M.A., J.-C. Chang, D. Weisman, R.V. Kesseli, and J.M. Burke. 2007. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). Theor. Appl. Genet. 115: 747-755. [pdf] [supp]
Chapman, M.A. and J.M. Burke. 2007. Genetic divergence and hybrid speciation. Evolution 61: 1773-1780. [pdf]
Ellis, J.R. and J.M. Burke. 2007. EST-SSRs as a resource for population genetic analyses. Heredity 99: 125-132. [pdf]
-2006-
Liu, A. and J.M. Burke. 2006. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics 173: 321-330. [pdf]
Ellis, J.R., C.H. Pashley, J.M. Burke, and D.E. McCauley. 2006. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol. Ecol. 15: 2345-2355. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Radishes gone wild. Heredity 97: 379-380. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Letting the gene out of the bottle: the population genetics of GM crops. New Phytol. (Tansley Review) 170: 429-443. [pdf]
Pashley, C.H., J.R. Ellis, D.E. McCauley, and J.M. Burke. 2006. EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 97: 381-388. [pdf] [supp]
Wills, D.M. and J.M. Burke. 2006. Chloroplast DNA variation confirms a single origin of domesticated sunflower (Helianthus annuus L.). J. Hered. 97: 403-408. [pdf]
Arnold, M.L. and J.M. Burke. 2006. Natural hybridization. In C.W. Fox and J.B. Wolf, eds. Pp. 399-413 in Evolutionary Genetics: Concepts and Case Studies. Oxford University Press.
-2005-
Burke, J.M., S.J. Knapp, and L.H. Rieseberg. 2005. Genetic consequences of selection during the evolution of cultivated sunflower. Genetics 171: 1933-1940. [pdf]
Lai, Z., T. Nakazato, M. Salmaso, J.M. Burke, S. Tang, S.J. Knapp, and L.H. Rieseberg. 2005. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171: 291-303. [pdf] [supp]
Wills, D.M., M.L. Hester, A. Liu and J.M. Burke. 2005. Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus. Theor. Appl. Genet. 110: 941-947. [pdf]
Wood, T.E., J.M. Burke and L.H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123: 157-170. [pdf]
-2004-
Cornman, R.S., J.M. Burke, R.A. Wesselingh and M.L. Arnold. 2004. Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population. Evolution 58: 2669-2681. [pdf]
Burke, J.M. 2004. When good plants go bad... Evolution 58:1637-1638. [pdf]
Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp and L.H. Rieseberg. 2004. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 167: 449-457. [pdf] [supp]
-2003-
Burke, J.M. and L. H. Rieseberg. 2003. Fitness effects of transgenic disease resistance in sunflowers. Science 300: 1250. [pdf]
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2003. The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Phil. Trans. R. Soc. London B 358: 1141-1147. [pdf]
-2002-
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2002. Directional selection is the primary cause of phenotypic diversification. Proc. Natl. Acad. Sci. USA 99: 12242-12245. [pdf] [supp]
Burke, J.M., K.A. Gardner and L.H. Rieseberg. 2002. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. Am. J. Bot. 89: 1550-1552. [pdf]
Burke, J.M., S. Tang, S.J. Knapp and L.H. Rieseberg. 2002 Genetic analysis of sunflower domestication. Genetics 161: 1257-1267. [pdf]
Burke, J.M. and J.L. Hamrick. 2002. Genetic variation and evidence of hybridization in the genus Rhus (Anacardiaceae). J. Hered. 93: 37-41. [pdf]
-2001-
Rieseberg, L.H. and J.M. Burke. 2001. A genic view of species integration. J. Evol. Biol. 14: 883-886. [pdf]
Burke, J.M. and M.L. Arnold. 2001. Genetics and the fitness of hybrids. Annu. Rev. Genet. 35: 31-52. [pdf]
Rieseberg, L.H. and J.M. Burke. 2001. The biological reality of species: gene flow, selection, and collective evolution. Taxon 50: 47-67. [pdf]
-2000-
Burke, J.M. and L.H. Rieseberg. 2000. Hybrids and hybridization. R. Robinson, ed. Plant Sciences for Students, Macmillan Reference USA, New York. [pdf]
Burke, J.M., C.W. DePamphilis, R. Wyatt, and M.L. Arnold. 2000. Nectar characteristics of interspecific hybrids and their parents in Aesculus (Hippocastanaceae) and Iris (Iridaceae). J. Torrey Bot. Soc. 127: 200-206. [pdf]
Burke, J.M., M.R. Bulger, R.A. Wesselingh, and M.L. Arnold. 2000. Frequency and spatial patterning of clonal reproduction in Louisiana iris hybrid populations. Evolution 54:137-144. [pdf]
-1999-
Allen, E.S., J.M. Burke, M.E. Welch, and L.H. Rieseberg. 1999. Reliability of science on the web. Nature 402: 722. [pdf]
Burke, J.M. and M.L. Arnold. 1999. Isolation and characterization of microsatellites in Iris. Mol. Ecol. 8: 1091-1092. [pdf]
Arnold, M.L., M.R. Bulger, J.M. Burke, A.L. Hempel, and J.H. Williams. 1999. Natural hybridization: how low can you go (and still be important)? Ecology 80: 371-381. [pdf]
-1998-
Burke, J.M., T.J. Voss, and M.L. Arnold. 1998. Genetic interactions and natural selection in Louisiana iris hybrids. Evolution 52: 1304-1310. [pdf]
Burke, J.M., S.E. Carney, and M.L. Arnold. 1998. Hybrid fitness in the Louisiana irises: analysis of parental and F1 performance. Evolution 52: 37-43. [pdf]
-1996-
Hodges, S.A., J.M. Burke, and M.L. Arnold. 1996. Natural formation of Iris hybrids: experimental evidence on the establishment of hybrid zones. Evolution 50: 2504- 2509. [pdf]
Chapman, M.A, J. Hvala, J. Strever, M. Matvienko, A. Kozik, R.W. Michelmore, S. Tang, S.J. Knapp, and J.M. Burke. 2009. Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor. Appl. Genet., in press.
Heesacker, A., R.L. Brunick, L.H. Rieseberg, J.M. Burke, S.J. Knapp. 2009. Karyotypic evolution of the common and silverleaf sunflower genomes. Plant Genome, in press.
Sherman, N.A. and J.M. Burke. 2009. Population genetic analysis reveals a homoploid hybrid origin of Stephanomeria diegensis (Asteraceae). Mol. Ecol., in press. [pdf]
Baskauf, C.J. and J.M. Burke. 2009. Population genetics of Astragalus bibullatus (Fabaceae) using AFLPs. J. Hered. 100: 424-431. [pdf]
Dechaine, J.M., J.C. Burger, M.A. Chapman, G.J. Seiler, R. Brunick, S.J. Knapp, and J.M. Burke. 2009. Fitness effects and genetic architecture of plant-herbivore interactions in sunflower crop-wild hybrids. New Phytol., doi: 10.1111/j.1469-8137.2009.02964.x. [pdf]
-2008-
Chapman, M.A., C.H. Pashley, J. Wenzler, J. Hvala, S. Tang, S.J. Knapp, and J.M. Burke. 2008. A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus L.). Plant Cell 20: 2931-2945. [pdf] [supp]
Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. 2008. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol., 25: 1260-1273. [pdf]
Rieseberg, L.H. and J.M. Burke. 2008. Molecular evidence and the origin of cultivated sunflower. Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.0804494105. [pdf]
Burger, J.C., M.A. Chapman, and J.M. Burke. 2008. Molecular insights into the evolution of crop plants. Am. J. Bot. 95:113-122. [pdf]
Baack, E.J., Y. Sapir, M.A. Chapman, J.M. Burke, and L.H. Rieseberg. 2008. Selection on domestication traits and quantitative trait loci in crop-wild sunflower hybrids. Mol. Ecol. 17: 666-677. [pdf]
-2007-
Burke, J.M., J.C. Burger, and M.A. Chapman. 2007. Crop evolution: from genetics to genomics. Curr. Opin. Genet. Dev. 17: 525-532. [pdf]
Chapman, M.A. and J.M. Burke. 2007. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol. 7: 60. doi:10.1186/1471-2229-7-60. [pdf]
Kolkman, J.M., S.T. Berry, A.J. Leon, M.B. Slabaugh, S. Tang, W. Gao, D.K. Shintani, J.M. Burke, and S.J. Knapp. 2007. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics 177: 457-468. [pdf]
Wills, D.M. and J.M. Burke. 2007. QTL analysis of the early domestication of sunflower. Genetics 176: 2589-2599. [pdf]
Chapman, M.A., J.-C. Chang, D. Weisman, R.V. Kesseli, and J.M. Burke. 2007. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). Theor. Appl. Genet. 115: 747-755. [pdf] [supp]
Chapman, M.A. and J.M. Burke. 2007. Genetic divergence and hybrid speciation. Evolution 61: 1773-1780. [pdf]
Ellis, J.R. and J.M. Burke. 2007. EST-SSRs as a resource for population genetic analyses. Heredity 99: 125-132. [pdf]
-2006-
Liu, A. and J.M. Burke. 2006. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics 173: 321-330. [pdf]
Ellis, J.R., C.H. Pashley, J.M. Burke, and D.E. McCauley. 2006. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol. Ecol. 15: 2345-2355. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Radishes gone wild. Heredity 97: 379-380. [pdf]
Chapman, M.A. and J.M. Burke. 2006. Letting the gene out of the bottle: the population genetics of GM crops. New Phytol. (Tansley Review) 170: 429-443. [pdf]
Pashley, C.H., J.R. Ellis, D.E. McCauley, and J.M. Burke. 2006. EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 97: 381-388. [pdf] [supp]
Wills, D.M. and J.M. Burke. 2006. Chloroplast DNA variation confirms a single origin of domesticated sunflower (Helianthus annuus L.). J. Hered. 97: 403-408. [pdf]
Arnold, M.L. and J.M. Burke. 2006. Natural hybridization. In C.W. Fox and J.B. Wolf, eds. Pp. 399-413 in Evolutionary Genetics: Concepts and Case Studies. Oxford University Press.
-2005-
Burke, J.M., S.J. Knapp, and L.H. Rieseberg. 2005. Genetic consequences of selection during the evolution of cultivated sunflower. Genetics 171: 1933-1940. [pdf]
Lai, Z., T. Nakazato, M. Salmaso, J.M. Burke, S. Tang, S.J. Knapp, and L.H. Rieseberg. 2005. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171: 291-303. [pdf] [supp]
Wills, D.M., M.L. Hester, A. Liu and J.M. Burke. 2005. Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus. Theor. Appl. Genet. 110: 941-947. [pdf]
Wood, T.E., J.M. Burke and L.H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123: 157-170. [pdf]
-2004-
Cornman, R.S., J.M. Burke, R.A. Wesselingh and M.L. Arnold. 2004. Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population. Evolution 58: 2669-2681. [pdf]
Burke, J.M. 2004. When good plants go bad... Evolution 58:1637-1638. [pdf]
Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp and L.H. Rieseberg. 2004. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 167: 449-457. [pdf] [supp]
-2003-
Burke, J.M. and L. H. Rieseberg. 2003. Fitness effects of transgenic disease resistance in sunflowers. Science 300: 1250. [pdf]
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2003. The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Phil. Trans. R. Soc. London B 358: 1141-1147. [pdf]
-2002-
Rieseberg, L.H., A. Widmer, A.M. Arntz and J.M. Burke. 2002. Directional selection is the primary cause of phenotypic diversification. Proc. Natl. Acad. Sci. USA 99: 12242-12245. [pdf] [supp]
Burke, J.M., K.A. Gardner and L.H. Rieseberg. 2002. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. Am. J. Bot. 89: 1550-1552. [pdf]
Burke, J.M., S. Tang, S.J. Knapp and L.H. Rieseberg. 2002 Genetic analysis of sunflower domestication. Genetics 161: 1257-1267. [pdf]
Burke, J.M. and J.L. Hamrick. 2002. Genetic variation and evidence of hybridization in the genus Rhus (Anacardiaceae). J. Hered. 93: 37-41. [pdf]
-2001-
Rieseberg, L.H. and J.M. Burke. 2001. A genic view of species integration. J. Evol. Biol. 14: 883-886. [pdf]
Burke, J.M. and M.L. Arnold. 2001. Genetics and the fitness of hybrids. Annu. Rev. Genet. 35: 31-52. [pdf]
Rieseberg, L.H. and J.M. Burke. 2001. The biological reality of species: gene flow, selection, and collective evolution. Taxon 50: 47-67. [pdf]
-2000-
Burke, J.M. and L.H. Rieseberg. 2000. Hybrids and hybridization. R. Robinson, ed. Plant Sciences for Students, Macmillan Reference USA, New York. [pdf]
Burke, J.M., C.W. DePamphilis, R. Wyatt, and M.L. Arnold. 2000. Nectar characteristics of interspecific hybrids and their parents in Aesculus (Hippocastanaceae) and Iris (Iridaceae). J. Torrey Bot. Soc. 127: 200-206. [pdf]
Burke, J.M., M.R. Bulger, R.A. Wesselingh, and M.L. Arnold. 2000. Frequency and spatial patterning of clonal reproduction in Louisiana iris hybrid populations. Evolution 54:137-144. [pdf]
-1999-
Allen, E.S., J.M. Burke, M.E. Welch, and L.H. Rieseberg. 1999. Reliability of science on the web. Nature 402: 722. [pdf]
Burke, J.M. and M.L. Arnold. 1999. Isolation and characterization of microsatellites in Iris. Mol. Ecol. 8: 1091-1092. [pdf]
Arnold, M.L., M.R. Bulger, J.M. Burke, A.L. Hempel, and J.H. Williams. 1999. Natural hybridization: how low can you go (and still be important)? Ecology 80: 371-381. [pdf]
-1998-
Burke, J.M., T.J. Voss, and M.L. Arnold. 1998. Genetic interactions and natural selection in Louisiana iris hybrids. Evolution 52: 1304-1310. [pdf]
Burke, J.M., S.E. Carney, and M.L. Arnold. 1998. Hybrid fitness in the Louisiana irises: analysis of parental and F1 performance. Evolution 52: 37-43. [pdf]
-1996-
Hodges, S.A., J.M. Burke, and M.L. Arnold. 1996. Natural formation of Iris hybrids: experimental evidence on the establishment of hybrid zones. Evolution 50: 2504- 2509. [pdf]
University of Georgia, Department of Plant Biology, Athens, GA 30602